====== Medical and Biomedical NLP ======

===== Overviews =====
  * [[https://www.researchgate.net/profile/Ghalem-Belalem/publication/279236151_Information_Extraction_in_the_Medical_Domain/links/5f4d0fc7a6fdcc14c5f7d2e8/Information-Extraction-in-the-Medical-Domain.pdf|Ghoulam et al 2015 - Information Extraction in the Medical Domain]]
  * [[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7442512/pdf/10-1055-s-0040-1702001.pdf|Hahn & Oleynik - Medical Information Extraction in the Age of Deep Learning]]

===== Biomedical =====
==== Datasets ====

    * [[https://amr.isi.edu/download.html|Bio AMR Corpus]]

===== Clinical Health Records =====
"Clinical Health Records (CHRs) are documents where doctors take notes on a patient’s medical condition, his or her progress, and suggest possible medication and treatment" (from [[https://rua.ua.es/dspace/bitstream/10045/57748/1/PLN_57_02.pdf|Espinosa-Anke et al 2016]]).  For more papers see [[https://aclanthology.org/search/?q=medical|ACL Anthology - Medical]].
  * [[https://people.dsv.su.se/~hercules/articles/Expertsystem_Beslutst%259Ad%20medicinsk%20informatik/Information%20Extraction%20for%20Clinical%20Records.PDF|Harkema et al - Information Extraction from Clinical Records]]
  * [[https://aclanthology.org/N18-5003.pdf|Finley et al 2018 - An automated medical scribe for documenting clinical encounters]]
  * [[https://aclanthology.org/2020.nlpmc-1.4.pdf|2020 - Generating Medical Reports from Patient-Doctor Conversations Using Sequence-to-Sequence Models]]
  * [[https://aclanthology.org/2020.clinicalnlp-1.8.pdf|2020 - Dilated Convolutional Attention Network for Medical Code Assignment from Clinical Text]]

===== Informal and Medical Forums =====
  * [[https://aclanthology.org/C10-2133.pdf|Sondhi et al 2010 - Shallow Information Extraction from Medical Forum Data]]

===== NLP for Detection of Diseases =====
NLP for detecting depression, dementia, Alzheimer's, etc.  See [[https://aclanthology.org/search/?q=Alzheimer%27s|ACL Anthology - Alzheimer's]] or [[https://aclanthology.org/search/?q=depression|ACL Anthology - Depression]]
  * Detecting Alzheimer's or Dementia
    * [[https://aclanthology.org/W16-0301.pdf|Fraser et al 2016 - Detecting late-life depression in Alzheimer’s disease through analysis of speech and language]]
    * [[https://aclanthology.org/N18-2110.pdf|Karlekar et al 2016 - Detecting Linguistic Characteristics of Alzheimer’s Dementia by Interpreting Neural Models]]
    * [[https://aclanthology.org/N19-1367.pdf|Fraser et al 2019 - Multilingual Prediction of Alzheimer’s Disease Through Domain Adaptation and Concept-Based Language Modelling]]
    * [[https://aclanthology.org/2020.acl-main.176.pdf|Cohen & Pakhomov 2020 - A Tale of Two Perplexities: Sensitivity of Neural Language Models to Lexical Retrieval Deficits in Dementia of the Alzheimer’s Type]]
  * Depression
    * [[https://aclanthology.org/W15-1204.pdf|Coppersmith et al 2015 - CLPsych 2015 Shared Task: Depression and PTSD on Twitter]]

===== Datasets =====
  * [[https://allenai.org/data/cord-19|CORD-19: Covid-19 Dataset]] [[https://arxiv.org/pdf/2004.10706.pdf|paper]]
  * [[https://amr.isi.edu/download.html|Bio AMR Corpus]]

===== Resources =====
  * [[https://aclanthology.org/search/?q=medical|ACL Anthology - Medical]]

===== Related Pages =====
  * [[Scientific Text Processing]]

===== People =====
  * [[https://scholar.google.com/citations?user=lr1JM5MAAAAJ&hl=en|Narges Razavian]]
  * [[https://scholar.google.com/citations?user=KTzRHmwAAAAJ&hl=en|Byron Wallace]]